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NNAAMMEE
       AFNI - Analysis of Functional NeuroImages


SSYYNNOOPPSSIISS
       afni [header file]


DDEESSCCRRIIPPTTIIOONN
       AFNI  (Analysis  of  Functional  NeuroImages) is a tool for viewing and
       analyzing 3D brain images, usually from functional  magnetic  resonence
       imaging scans.

       The  AFNI distribution consists of hundreds of programs, and is far too
       extensive to document as a man page.

       For quick usage info, type

       afni -help

       Full postscript documentation  and  READMEs  can  be  found  in  %%PRE-
       FIX%%/share/doc/afni.

       For more information visit the AFNI WEB site at

       http://afni.nimh.nih.gov


FFIILLEESS
        .afnirc, .cshrc, .tcshrc, .profile, .bashrc


EENNVVIIRROONNMMEENNTT
       Users  of  this  installation  must  have %%PREFIX%%/bin in their PATH.
       AFNI_PLUGINPATH must include %%PREFIX%%/lib/afni so that AFNI can  find
       plugins, and %%PREFIX%%/share/afni so that AFNI can find startup images
       and atlases.

       For csh-compatible shells:

       setenv AFNI_PLUGINPATH %%PREFIX%%/lib/afni:%%PREFIX%%/share/afni

       For sh-compatible shells:

       AFNI_PLUGINPATH=%%PREFIX%%/lib/afni:%%PREFIX%%/share/afni
       export AFNI_PLUGINPATH

       If you plan to use the atlas files, set AFNI_GLOBAL_SESSION  to  %%PRE-
       FIX%%/share/afni.

       Note  that  these  values  are  particular to this installation.  These
       files may be located elsewhere on other machines.  There are many envi-
       ronment variables to control AFNI behavior.  See the full AFNI documen-
       tation, particularly AFNIRC for details.


SSEEEE AALLSSOO
       SPM, Caret, FreeSurfer, BrainVoyager, FSL


AAUUTTHHOORR
       RW Cox, PhD
       National Institutes of Health


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