ECP MEG Data Folders

At the MEG lab:

Data is acquired to the MEG_acq/ecp/ folder
Data is tSSS processed and organized into raw and tSSS folders (the format of the data can be seen below)

Data is uploaded to to the RCC using scp (/rcc/stor1/projects/ECP/MEG/MEG_Orig)
Data is copied into /rcc/stor1/projects/ECP/MEG/MEG_Work for further processing

Folder Layout /rcc/stor1/projects/ECP/MEG/MEG_Work

All subjects have a folder with both the anatomy, RAW, tSSS, Preprocessed, and Processed Data

Anatomy Layout

Typical Freesurfer layout with BEM process performed
The folder is always labelled Anatomy (a hack to make all folders homogeneous and easier to process)
The Anatomy-trans.fif is created during the MNE python coregistration step 

Data Layout

RAW and tSSS

The data is labelled with Subjid+_+DataType+_run+RunNumber+_raw.fif 

Processing

Initialization

Initialization creates a subject pandas dataframe saved as a csv file in the aProjects folder at the top of the MEG Project folder

Import??

Preproc Initialization creates a folder for each data type and creates a link to the original dataset

Cleaning

Cleaning (baddata pipeline) performs ICA removal of heartbeat and eyeblink artifact that is correlated to EOG and ECG electrodes at a threshold of (r=???)

RCC preprocessing

The data is then copied to a folder /rcc/stor1/projects/ECP/MEG/MEG_Work