Difference between revisions of "ECP MEG Data Folders"
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===Data Layout=== | ===Data Layout=== | ||
====RAW and tSSS==== | ====RAW and tSSS==== | ||
− | [[file: RAW format.PNG]] | + | [[file: RAW format.PNG | px200]] |
====Initialized===== | ====Initialized===== |
Revision as of 18:36, 10 June 2019
Contents
At the MEG lab:
Data is acquired to the MEG_acq/ecp/ folder Data is tSSS processed and organized into raw and tSSS folders Data is uploaded to to the RCC using scp (/rcc/stor1/projects/ECP/MEG/MEG_Orig) Data is copied into /rcc/stor1/projects/ECP/MEG/MEG_Work
Folder Layout /rcc/stor1/projects/ECP/MEG/MEG_Work
All subjects have a folder with both the anatomy, RAW, tSSS, Preprocessed, and Processed Data
Anatomy Layout
Typical Freesurfer layout with BEM process performed The folder is always labelled Anatomy (a hack to make all folders homogeneous and easier to process) The Anatomy-trans.fif is created during the MNE python coregistration step
Data Layout
RAW and tSSS
Initialized=
Initialization creates a subject pandas dataframe saved as a csv file in the aProjects folder at the top of the MEG Project folder Preproc Initialization creates a folder for each data type and creates a link to the original dataset Cleaning (baddata pipeline) performs ICA removal of heartbeat and eyeblink artifact that is correlated to EOG and ECG electrodes at a threshold of (r=???)
RCC preprocessing
The data is then copied to a folder /rcc/stor1/projects/ECP/MEG/MEG_Work