Difference between revisions of "ECP MEG Data Folders"
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(→RAW and tSSS) |
(→Data Layout) |
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===Data Layout=== | ===Data Layout=== | ||
| + | ====Data Folders==== | ||
| + | |||
====RAW and tSSS==== | ====RAW and tSSS==== | ||
The data is labelled with Subjid+_+DataType+_run+RunNumber+_raw.fif | The data is labelled with Subjid+_+DataType+_run+RunNumber+_raw.fif | ||
[[file: RAW format.PNG | 300px]] | [[file: RAW format.PNG | 300px]] | ||
| − | ==== | + | ===Processing=== |
| + | ====Initialization==== | ||
Initialization creates a subject pandas dataframe saved as a csv file in the aProjects folder at the top of the MEG Project folder | Initialization creates a subject pandas dataframe saved as a csv file in the aProjects folder at the top of the MEG Project folder | ||
| + | ====Import??==== | ||
Preproc Initialization creates a folder for each data type and creates a link to the original dataset | Preproc Initialization creates a folder for each data type and creates a link to the original dataset | ||
| + | ====Cleaning==== | ||
Cleaning (baddata pipeline) performs ICA removal of heartbeat and eyeblink artifact that is correlated to EOG and ECG electrodes at a threshold of (r=???) | Cleaning (baddata pipeline) performs ICA removal of heartbeat and eyeblink artifact that is correlated to EOG and ECG electrodes at a threshold of (r=???) | ||
[[file:Clean data.png|400px]] | [[file:Clean data.png|400px]] | ||
Revision as of 18:53, 10 June 2019
Contents
At the MEG lab:
Data is acquired to the MEG_acq/ecp/ folder Data is tSSS processed and organized into raw and tSSS folders Data is uploaded to to the RCC using scp (/rcc/stor1/projects/ECP/MEG/MEG_Orig) Data is copied into /rcc/stor1/projects/ECP/MEG/MEG_Work
Folder Layout /rcc/stor1/projects/ECP/MEG/MEG_Work
All subjects have a folder with both the anatomy, RAW, tSSS, Preprocessed, and Processed Data
Anatomy Layout
Typical Freesurfer layout with BEM process performed
The folder is always labelled Anatomy (a hack to make all folders homogeneous and easier to process)
The Anatomy-trans.fif is created during the MNE python coregistration step
Data Layout
Data Folders
RAW and tSSS
The data is labelled with Subjid+_+DataType+_run+RunNumber+_raw.fif
Processing
Initialization
Initialization creates a subject pandas dataframe saved as a csv file in the aProjects folder at the top of the MEG Project folder
Import??
Preproc Initialization creates a folder for each data type and creates a link to the original dataset
Cleaning
Cleaning (baddata pipeline) performs ICA removal of heartbeat and eyeblink artifact that is correlated to EOG and ECG electrodes at a threshold of (r=???)
RCC preprocessing
The data is then copied to a folder /rcc/stor1/projects/ECP/MEG/MEG_Work
